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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_451310_454261_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
451310 - 454261
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTAGCCTTTATT
Flanking Amino Acid:
KMQESREQSLSHVSNTEVSD
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.1
38.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.9
0.65
0.9
74.9
34.7
Minor 5ss
40
-1.1
3.2
57
47.3
Minor BPS
64.5
0.54
1.7
80.61
41.3

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073
ENSAPLT00000003059
447666 - 483753
36088
ENSAPLT00000043657
444992 - 482659
37668