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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_454342_456247_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
454342 - 456247
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTATATAAACT
Flanking Amino Acid:
LGSNLSMSSEIMTCTDYIPR
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
52.4
0.15
1.9
76.04
40.3

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073
ENSAPLT00000003059
447666 - 483753
36088