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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_457241_467838_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
457241 - 467838
Intron Length:
10598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATTCTTAATT
Flanking Amino Acid:
TTQTYGLPPFASTTNANPVS
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.8
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.9
75.9
37.6
Minor 5ss
35.7
-1.6
3.1
50.5
45.5
Minor BPS
79.3
1
1
85.77
33.9

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022312
447666 - 483738
36073