About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4609541_4610731_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4609541 - 4610731
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCTTTCACT
Flanking Amino Acid:
RLNMYRQKERRNKRGKVIKP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.4
0.48
0.9
70.7
34.5
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
66.4
0.6
1.7
80.24
42

Associated Gene:

Gene:
GNL2
Ensembl Gene ID:
ENSAPLG00000006508
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006804
4609253 - 4621482
12230