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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4611463_4612398_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4611463 - 4612398
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CATCTTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCA
Flanking Amino Acid:
SLFHDRIKPHNSRVHILDTE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
83.8
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.7
0.56
0.8
73.4
31.1
Minor 5ss
42.7
-0.8
3.2
64
40.7
Minor BPS
65.3
0.48
1.6
73.92
38.7

Associated Gene:

Gene:
GNL2
Ensembl Gene ID:
ENSAPLG00000006508
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006804
4609253 - 4621482
12230