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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4613042_4614377_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4613042 - 4614377
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTAGACATAAAT
Flanking Amino Acid:
SKRIWGELYKVIDSSDVVVQ
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
81.4
32.7
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
31.4
-2.1
2.5
36.7
40.4
Minor BPS
49
0
2
72.6
43.3

Associated Gene:

Gene:
GNL2
Ensembl Gene ID:
ENSAPLG00000006508
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006804
4609253 - 4621482
12230