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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4616409_4616518_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4616409 - 4616518
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTAATGTTAATT
Flanking Amino Acid:
SETDIVLKGVVQVEKIKSPE
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
78.1
36.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.6
0.71
0.9
78
40.1
Minor 5ss
39.4
-1.2
3
50.9
40.1
Minor BPS
49.8
0.06
2.1
68.64
42.8

Associated Gene:

Gene:
GNL2
Ensembl Gene ID:
ENSAPLG00000006508
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006804
4609253 - 4621482
12230