About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4616678_4617096_F


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
4616678 - 4617096

Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGTGACAA

5'SS Class:
major

3'SS Sequence:
TGGATTCTTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTTAC

U12 Branch Point Sequence:
TGTTACTGGATT

Flanking Amino Acid:
LASRTGKLLKGGEPDVQTVS

Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.8
0.66
0.9
65.6
35.4

Major BPS
59.1
0.23
1.2
52.7
42.9

Major PPT
77.2
0.61
0.9
73.7
41.7

Minor 5ss
31.9
-2.1
3
38.1
46.8

Minor BPS
58.2
0.34
1.7
77.9
38.2

Associated Gene:

Gene:
GNL2

Ensembl Gene ID:

Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4609253 - 4621482
12230