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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4619464_4620248_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4619464 - 4620248
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGTGTATTTACA
Flanking Amino Acid:
QPCKKLTSKERRRAERQQRS
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
80.1
0.68
0.9
73
41.3
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
48.5
-0.1
2
64.75
41.2

Associated Gene:

Gene:
GNL2
Ensembl Gene ID:
ENSAPLG00000006508
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006804
4609253 - 4621482
12230