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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4621401_4622786_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4621401 - 4622786
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGAATTTAATT
Flanking Amino Acid:
FLKRTNQQLKAQLESIISK*
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
63.2
0.49
1.5
77.42
39.4

Associated Gene:

Gene:
DNALI1
Ensembl Gene ID:
ENSAPLG00000006770
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007032
4621259 - 4624772
3514