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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_463238_467838_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
463238 - 467838
Intron Length:
4601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATTCTTAATT
Flanking Amino Acid:
SPAHYSYSIEASTTNANPVS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.1
69.7
43.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.9
75.9
37.6
Minor 5ss
45.1
-0.5
2.6
58.7
45.8
Minor BPS
79.3
1
1
85.77
33.9

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000003059
447666 - 483753
36088