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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4644394_4644482_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4644394 - 4644482
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
TGTCATTCCATG
Flanking Amino Acid:
PEHKKQQCPYGKKCTYGIKC
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
40.5
-0.8
2
46.73
40.3

Associated Gene:

Gene:
ZC3H12A
Ensembl Gene ID:
ENSAPLG00000024542
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045548
4641381 - 4651376
9996