About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4646292_4650782_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4646292 - 4650782
Intron Length:
4491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATG
Flanking Amino Acid:
IVIDGSNVAMSHGNKEVFSC
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
35
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82
0.72
0.9
78.2
33.9
Minor 5ss
44.5
-0.6
2.7
57.3
47.4
Minor BPS
83.7
0.92
1.1
82.98
31.5

Associated Gene:

Gene:
ZC3H12A
Ensembl Gene ID:
ENSAPLG00000024542
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045548
4641381 - 4651376
9996