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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4652294_4666092_F

Intron Information:

Intron Rank:
125199
Intron Class:
major
Intron Phase:
Intron Coordinates:
4652294 - 4666092
Intron Length:
13799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCAGGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.2
30.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.2
0.66
0.9
75.6
33.5
Minor 5ss
31.6
-2.1
3.2
40.1
46.3
Minor BPS
45.3
-0.3
2.3
65.67
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017428
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022018
4651397 - 4666445
15049