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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_467922_469424_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
467922 - 469424
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCCTCTAATA
Flanking Amino Acid:
STSAVASISQEYPTYTILGQ
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.2
0.61
0.8
74.1
29.5
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
64.8
0.46
1.6
77.53
32.9

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073
ENSAPLT00000003059
447666 - 483753
36088