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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_478418_479343_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
478418 - 479343
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
VASDDNGQDLSNYNFSTDGF
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.1
36.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80
0.68
0.9
77.6
35.5
Minor 5ss
37.1
-1.5
3.3
49.2
47.3
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003059
447666 - 483753
36088
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073