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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4814360_4815623_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4814360 - 4815623
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTTCTCTGACCT
Flanking Amino Acid:
FHDSFEATKKACDQLALGVV
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
81.7
0.71
0.7
73.4
31.6
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
53.1
0.18
1.8
73.74
43.1

Associated Gene:

Gene:
GRIK3
Ensembl Gene ID:
ENSAPLG00000007300
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007633
4753545 - 4860226
106682