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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_481661_482075_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
481661 - 482075
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
ALKSLLLIQSRKNCVNILIT
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003059
447666 - 483753
36088
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073