About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4820991_4824973_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4820991 - 4824973
Intron Length:
3983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
CATGTTTAAACT
Flanking Amino Acid:
EYYHFIFTTLDLYALDLEPY
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
78.3
0.64
1
82.7
26.3
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
51
0.11
1.8
67.59
44

Associated Gene:

Gene:
GRIK3
Ensembl Gene ID:
ENSAPLG00000007300
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007633
4753545 - 4860226
106682