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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_482198_482468_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
482198 - 482468
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAAGGCTTATTA
Flanking Amino Acid:
IENIYSATKIGKESCFERIV
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.72
0.9
79.9
32.1
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
46.5
-0.2
2
56.97
42.7

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043657
444992 - 482659
37668
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073
ENSAPLT00000003059
447666 - 483753
36088