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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4830315_4833813_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4830315 - 4833813
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTTGTTTCATT
Flanking Amino Acid:
ISLKEDGLEKVGTWNPANGL
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
50.6
0.1
2.2
74.65
43.4

Associated Gene:

Gene:
GRIK3
Ensembl Gene ID:
ENSAPLG00000007300
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007633
4753545 - 4860226
106682