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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4853068_4858391_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4853068 - 4858391
Intron Length:
5324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATTTGTATTT
Flanking Amino Acid:
KDGATMTFFKKSKISTFEKM
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
77.4
41.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.8
-0.2
2.1
64.83
40.5

Associated Gene:

Gene:
GRIK3
Ensembl Gene ID:
ENSAPLG00000007300
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007633
4753545 - 4860226
106682