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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_497210_498528_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
497210 - 498528
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
AAGGCATTGACC
Flanking Amino Acid:
LRRPDFVLWTGDDTPHVPNE
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
49.7
-0
1.7
57.98
40.8

Associated Gene:

Gene:
SMPDL3B
Ensembl Gene ID:
ENSAPLG00000002828
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002872
493000 - 499949
6950