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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_499252_499379_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
499252 - 499379
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGGGCT
5'SS Class:
major
3'SS Sequence:
CTTCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GCCGCCTGACGG
Flanking Amino Acid:
MWSGHGNFDGGYGPA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
58
41
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
77.5
0.62
0.7
69.2
31.4
Minor 5ss
25.8
-2.8
3.6
38.8
46.5
Minor BPS
39.1
-0.9
2
35.99
45.6

Associated Gene:

Gene:
RPA2
Ensembl Gene ID:
ENSAPLG00000002616
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002663
499021 - 503117
4097