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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_499672_499785_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
499672 - 499785
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGTC
5'SS Class:
major
3'SS Sequence:
TCCTCAAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CCTTCCTCAAAC
Flanking Amino Acid:
FRIRDVEISQVTIMGIIRHA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.6
39.6
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
65
0.34
0.9
59.1
34.8
Minor 5ss
34.1
-1.8
3.7
48.7
47.8
Minor BPS
60.8
0.32
1.7
67.84
43.5

Associated Gene:

Gene:
RPA2
Ensembl Gene ID:
ENSAPLG00000002616
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002663
499021 - 503117
4097