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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_503006_503110_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
503006 - 503110
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAAGTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TGGAAGGTGATC
Flanking Amino Acid:
DDDHYKSTDADL*
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.1
57
37
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
36.5
-1.5
3.5
45.6
44.1
Minor BPS
34.7
-1.2
2.4
43.48
38.4

Associated Gene:

Gene:
RPA2
Ensembl Gene ID:
ENSAPLG00000002616
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002663
499021 - 503117
4097