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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5050428_5050518_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5050428 - 5050518

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TCTCTCTTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

AGTTGCTCACCA

Flanking Amino Acid:

TARVGRGKCIKPRMKRRASD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

71.7

33.7

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

76.5

0.6

33.7

Minor 5ss

34.2

-1.8

3.2

45.6

43.6

Minor BPS

47.1

-0.2

2.2

62.85

43.2

Associated Gene:

Gene:

STK40

Ensembl Gene ID:

ENSAPLG00000008561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041812

5049522 - 5062309

12788

ENSAPLT00000037083

5049522 - 5062986

13465

ENSAPLT00000021010

5049522 - 5062986

13465