About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5051716_5052217_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5051716 - 5052217
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTCTGGGAGT
Flanking Amino Acid:
DGTDDFYQLKILTLEERGDK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.3
0.55
1
75.4
27.2
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
46.5
-0.1
2.4
75.29
42

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618
ENSAPLT00000041812
5049522 - 5062309
12788
ENSAPLT00000037083
5049522 - 5062986
13465
ENSAPLT00000036904
5050519 - 5064610
14092