About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5053478_5053570_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5053478 - 5053570
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
GATCAATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATTTCAGTGACA
Flanking Amino Acid:
IIEDLEANRMHYVIKEKRLS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
69.6
36.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
67.9
0.4
1
59.2
41.3
Minor 5ss
28.3
-2.5
2.7
29.2
36.6
Minor BPS
52.7
0.08
2.3
74.04
37.3

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037083
5049522 - 5062986
13465