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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5053661_5054719_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5053661 - 5054719
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TATTGTGTATTT
Flanking Amino Acid:
VVRVVEALHKKNIVHRDLKL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.4
0.66
0.9
73.2
41.7
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
44
-0.3
2.4
68.17
43.6

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618
ENSAPLT00000041812
5049522 - 5062309
12788
ENSAPLT00000037083
5049522 - 5062986
13465
ENSAPLT00000036904
5050519 - 5064610
14092