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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5054773_5057353_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5054773 - 5057353
Intron Length:
2581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGATTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTGTTCACC
Flanking Amino Acid:
LKLGNMVLNKRTHRITITNF
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.5
0.55
0.9
66.2
40.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
49.3
-0
2.4
69.02
43.1

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037083
5049522 - 5062986
13465
ENSAPLT00000036904
5050519 - 5064610
14092
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618
ENSAPLT00000041812
5049522 - 5062309
12788