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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_505678_507442_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
505678 - 507442
Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAAACTGAAAA
Flanking Amino Acid:
PRSRKVPSDTVVLLESTKGS
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
47.3
-0.2
1.8
56.84
41.3

Associated Gene:

Gene:
THEMIS2
Ensembl Gene ID:
ENSAPLG00000029421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019062
505646 - 513899
8254