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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5057470_5060604_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5057470 - 5060604
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGCATC
5'SS Class:
major
3'SS Sequence:
TCCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTGTCTTAAAGC
Flanking Amino Acid:
PAYISPDVLSGRPYRGKPSD
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
68.8
42.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
42.7
-0.8
3.2
56.9
42.2
Minor BPS
49.6
-0
2
61.04
45.1

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036904
5050519 - 5064610
14092
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618
ENSAPLT00000041812
5049522 - 5062309
12788
ENSAPLT00000037083
5049522 - 5062986
13465