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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5060750_5060904_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5060750 - 5060904
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GTGGCCTCACCG
Flanking Amino Acid:
KIKAAEYTIPEDGRVSENTV
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.4
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
83.8
0.76
0.7
76.7
32
Minor 5ss
31.8
-2.1
2.6
31.3
35.7
Minor BPS
46.5
-0.4
2
52.1
48

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037083
5049522 - 5062986
13465
ENSAPLT00000036904
5050519 - 5064610
14092
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618