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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5061872_5062328_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5061872 - 5062328
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GGCTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTGGCTCTGACG
Flanking Amino Acid:
QVANPENPQEVKVTEECSQY
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.6
0.42
0.9
61.7
34.9
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
46.7
-0.4
1.8
51.55
43.3

Associated Gene:

Gene:
STK40
Ensembl Gene ID:
ENSAPLG00000008561
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037083
5049522 - 5062986
13465
ENSAPLT00000036904
5050519 - 5064610
14092
ENSAPLT00000021010
5049522 - 5062986
13465
ENSAPLT00000008923
5048369 - 5062986
14618