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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5069363_5069444_R

Intron Information:

Intron Rank:
142443
Intron Class:
major
Intron Phase:
Intron Coordinates:
5069363 - 5069444
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCATCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGCTCCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.3
0.59
0.8
69.6
31.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47.4
-0.1
2.1
70
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023940
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037874
5069324 - 5073074
3751
ENSAPLT00000025275
5069324 - 5073074
3751