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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5070525_5071884_R

Intron Information:

Intron Rank:
142448
Intron Class:
major
Intron Phase:
Intron Coordinates:
5070525 - 5071884
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
GCTCCCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
AGCGCCTGATGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
66.7
0.38
1
61.5
34.9
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
41.7
-0.6
2
47.01
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023940
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040419
5069846 - 5073074
3229
ENSAPLT00000037874
5069324 - 5073074
3751
ENSAPLT00000025514
5069846 - 5073074
3229
ENSAPLT00000025275
5069324 - 5073074
3751