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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5077480_5077945_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5077480 - 5077945
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTGCTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATCTTCTTATTT
Flanking Amino Acid:
NERGRARGTFQFRARGRGWG
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.3
0.73
0.9
76
38
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
64.4
0.53
1.6
77.4
39.8

Associated Gene:

Gene:
THRAP3
Ensembl Gene ID:
ENSAPLG00000009009
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009407
5075586 - 5103697
28112