About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5078139_5078793_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5078139 - 5078793
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAGG
5'SS Class:
major
3'SS Sequence:
ATCACTGAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
GTCCCCTTGACC
Flanking Amino Acid:
TEKSHKGSKKKKHRRVRERS
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
68.1
42.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
56.9
0.16
1.1
51.1
41.3
Minor 5ss
42.9
-0.8
2.5
50.8
40
Minor BPS
70.7
0.63
1.3
72.46
38.6

Associated Gene:

Gene:
THRAP3
Ensembl Gene ID:
ENSAPLG00000009009
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009407
5075586 - 5103697
28112