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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5082166_5082961_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5082166 - 5082961
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AACCACCCCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTGCTCAACC
Flanking Amino Acid:
HIVTIVHHVREHHFGSSGMT
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
70.2
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
59.8
0.22
0.9
50.5
32.8
Minor 5ss
26.7
-2.7
2.9
31.1
43
Minor BPS
61.7
0.35
2
75.68
40.5

Associated Gene:

Gene:
THRAP3
Ensembl Gene ID:
ENSAPLG00000009009
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009407
5075586 - 5103697
28112