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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5090530_5097451_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5090530 - 5097451
Intron Length:
6922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.4
0.66
0.8
78
30.9
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
47.8
-0
2.2
77.26
39.3

Associated Gene:

Gene:
THRAP3
Ensembl Gene ID:
ENSAPLG00000009009
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009407
5075586 - 5103697
28112