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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5128320_5128428_R

Intron Information:

Intron Rank:
155289
Intron Class:
major
Intron Phase:
Intron Coordinates:
5128320 - 5128428
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CCGCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CCAGCCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
70.8
0.47
0.8
64.9
30.7
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
51.4
0.03
1.9
58.37
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031030
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041315
5127239 - 5131383
4145