About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5186417_5186522_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5186417 - 5186522
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTTTGCTCATTA
Flanking Amino Acid:
AYSDVQDVKKFAKLSAELTH
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.7
31.3
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
48.6
-0.1
2.8
67.6
43.7
Minor BPS
49.8
-0
2.2
71.35
41.4

Associated Gene:

Gene:
ADPRHL2
Ensembl Gene ID:
ENSAPLG00000009421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009827
5185194 - 5188666
3473