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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5190663_5190918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5190663 - 5190918
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
CCCCACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
ACTGCCACGACT
Flanking Amino Acid:
RPNVELCRDQVQYGLTDEVH
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
72.3
0.5
0.8
64.6
30.4
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
47.4
-0.1
2
66.73
43.9

Associated Gene:

Gene:
TEKT2
Ensembl Gene ID:
ENSAPLG00000009574
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009974
5189826 - 5194851
5026