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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5191063_5191763_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5191063 - 5191763
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATCC
Flanking Amino Acid:
YDELKWQEQNTLEEIAEMEE
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.9
0.65
0.7
78.1
29.5
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
60.6
0.31
1.6
65.26
40.6

Associated Gene:

Gene:
TEKT2
Ensembl Gene ID:
ENSAPLG00000009574
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009974
5189826 - 5194851
5026