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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5193242_5193359_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5193242 - 5193359
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TCCCCACTGACT
Flanking Amino Acid:
QRVNEAFEQLCHLQEARQQL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
82.8
0.74
0.8
77.6
31.2
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
47.5
-0.1
2
66.91
43.5

Associated Gene:

Gene:
TEKT2
Ensembl Gene ID:
ENSAPLG00000009574
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009974
5189826 - 5194851
5026