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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5194294_5194695_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5194294 - 5194695
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCCTT
5'SS Class:
major
3'SS Sequence:
ACTCTAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTACTCTAATT
Flanking Amino Acid:
RALRNETNNQAKWDEHDNQT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.8
43.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
73.4
0.53
0.9
63.3
41.4
Minor 5ss
37
-1.5
3.5
55.3
48.9
Minor BPS
60
0.39
1.7
77.06
39.9

Associated Gene:

Gene:
TEKT2
Ensembl Gene ID:
ENSAPLG00000009574
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009974
5189826 - 5194851
5026