Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5208469_5209976_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5208469 - 5209976

Intron Length:

1508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGATTG

5'SS Class:

strong_major

3'SS Sequence:

CCCTTCTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

GCTAAGTGAACT

Flanking Amino Acid:

FYLCSHAGIQGTSRPSHYHV

Intron Amino Acid Position:

959

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

37.1

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

0.61

0.7

26.1

Minor 5ss

47.6

-0.2

2.8

64.3

47.2

Minor BPS

44.3

-0.3

2.3

63.64

45.7

Associated Gene:

Gene:

AGO3

Ensembl Gene ID:

ENSAPLG00000009642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010139

5207467 - 5234945

27479