Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5210834_5211178_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5210834 - 5211178

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTTCA

5'SS Class:

major

3'SS Sequence:

CATGTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

AAAAACTAAACT

Flanking Amino Acid:

DGVSEGQFRQVLYYELLAIR

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.2

69.7

37.3

Major BPS

84.8

0.86

85.7

34.9

Major PPT

69.2

0.43

0.9

62.2

39.5

Minor 5ss

35.4

-1.7

2.9

42.3

44.4

Minor BPS

49.4

0.04

1.9

66.86

42.8

Associated Gene:

Gene:

AGO3

Ensembl Gene ID:

ENSAPLG00000009642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010139

5207467 - 5234945

27479