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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5214104_5214514_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5214104 - 5214514
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCAT
5'SS Class:
major
3'SS Sequence:
TTCTCATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AACTTCTCATCT
Flanking Amino Acid:
TQRQCREEILKGFTDQLRKI
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.4
38.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.9
0.67
0.7
78.3
29.3
Minor 5ss
34.1
-1.8
3.5
47.7
42.3
Minor BPS
50
0.08
1.8
67.43
43.3

Associated Gene:

Gene:
AGO3
Ensembl Gene ID:
ENSAPLG00000009642
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010139
5207467 - 5234945
27479